Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.04■□□□□ 0.8
CLDN3O15551 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CLDN3O15551 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CLDN3O15551 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.03■□□□□ 0.8
CLDN3O15551 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 AP000550.4-202ENST00000639755 178 ntBASIC20.03■□□□□ 0.8
CLDN3O15551 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.03■□□□□ 0.8
CLDN3O15551 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CLDN3O15551 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CLDN3O15551 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.03■□□□□ 0.8
CLDN3O15551 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN3O15551 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CLDN3O15551 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN3O15551 WIZP1-201ENST00000531444 2299 ntBASIC20.02■□□□□ 0.8
CLDN3O15551 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.02■□□□□ 0.8
CLDN3O15551 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLDN3O15551 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN3O15551 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN3O15551 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
CLDN3O15551 AC116407.4-201ENST00000623319 1061 ntBASIC20.02■□□□□ 0.8
CLDN3O15551 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.02■□□□□ 0.8
CLDN3O15551 IER3-202ENST00000376377 1350 ntBASIC20.02■□□□□ 0.8
CLDN3O15551 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN3O15551 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN3O15551 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.02■□□□□ 0.79
CLDN3O15551 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLDN3O15551 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLDN3O15551 AC073592.3-201ENST00000625118 1834 ntBASIC20.02■□□□□ 0.79
CLDN3O15551 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.02■□□□□ 0.79
CLDN3O15551 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CLDN3O15551 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 AC020763.4-201ENST00000623414 4170 ntBASIC20.01■□□□□ 0.79
CLDN3O15551 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN3O15551 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CLDN3O15551 AL162741.1-201ENST00000565563 1558 ntBASIC20.01■□□□□ 0.79
CLDN3O15551 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.01■□□□□ 0.79
CLDN3O15551 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.01■□□□□ 0.79
CLDN3O15551 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.01■□□□□ 0.79
CLDN3O15551 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN3O15551 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.01■□□□□ 0.79
CLDN3O15551 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN3O15551 AC024563.2-201ENST00000603282 481 ntBASIC20.01■□□□□ 0.79
CLDN3O15551 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.01■□□□□ 0.79
CLDN3O15551 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN3O15551 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN3O15551 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN3O15551 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN3O15551 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CLDN3O15551 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20■□□□□ 0.79
CLDN3O15551 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20■□□□□ 0.79
CLDN3O15551 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms