Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 MIR663A-201ENST00000385250 93 ntBASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AC026271.2-201ENST00000428091 497 ntBASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AC080038.1-201ENST00000611274 1154 ntBASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 HLA-A-209ENST00000638375 975 ntBASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
USH1CQ9Y6N9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 PNMA6B-201ENST00000538162 1200 ntBASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USH1CQ9Y6N9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AL162430.1-201ENST00000480705 870 ntBASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USH1CQ9Y6N9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 AC008556.1-201ENST00000610908 2040 ntBASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms