Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
VCX3AQ9NNX9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 AC104417.2-201ENST00000562989 1793 ntBASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 AC116351.2-201ENST00000606540 1585 ntBASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCX3AQ9NNX9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 YBX1P1-201ENST00000445822 960 ntBASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 MFSD11-216ENST00000590393 1141 ntBASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 PP12613-201ENST00000424958 2230 ntBASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCX3AQ9NNX9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 AC023632.3-201ENST00000521633 145 ntBASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCX3AQ9NNX9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms