Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL12A1Q99715 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16■□□□□ 0.15
COL12A1Q99715 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16■□□□□ 0.15
COL12A1Q99715 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
COL12A1Q99715 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 PDPK2P-202ENST00000562415 1191 ntBASIC16■□□□□ 0.15
COL12A1Q99715 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 AP000867.4-201ENST00000641616 219 ntBASIC16■□□□□ 0.15
COL12A1Q99715 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
COL12A1Q99715 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 AC105339.3-201ENST00000560043 636 ntBASIC15.99■□□□□ 0.15
COL12A1Q99715 MTDHP4-201ENST00000600287 670 ntBASIC15.99■□□□□ 0.15
COL12A1Q99715 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.99■□□□□ 0.15
COL12A1Q99715 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
COL12A1Q99715 MED17-221ENST00000639724 2317 ntTSL 5 BASIC15.99■□□□□ 0.15
COL12A1Q99715 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.99■□□□□ 0.15
COL12A1Q99715 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.99■□□□□ 0.15
COL12A1Q99715 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 AC097374.2-201ENST00000618617 1306 ntBASIC15.99■□□□□ 0.15
COL12A1Q99715 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL12A1Q99715 MIR661-201ENST00000384842 89 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 MRPL20P1-201ENST00000400819 433 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.98■□□□□ 0.15
COL12A1Q99715 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL12A1Q99715 OR8S1-201ENST00000310194 1080 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 AP002414.1-201ENST00000391405 1147 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.98■□□□□ 0.15
COL12A1Q99715 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
COL12A1Q99715 AC093520.2-201ENST00000561830 333 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.98■□□□□ 0.15
COL12A1Q99715 AL513190.1-201ENST00000621254 727 ntBASIC15.98■□□□□ 0.15
COL12A1Q99715 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.97■□□□□ 0.15
COL12A1Q99715 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.97■□□□□ 0.15
COL12A1Q99715 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
COL12A1Q99715 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.97■□□□□ 0.15
COL12A1Q99715 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC15.97■□□□□ 0.15
COL12A1Q99715 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.97■□□□□ 0.15
COL12A1Q99715 AC092902.6-201ENST00000641783 218 ntBASIC15.97■□□□□ 0.15
COL12A1Q99715 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
COL12A1Q99715 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL12A1Q99715 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.97■□□□□ 0.15
COL12A1Q99715 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms