Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC126763.1-201ENST00000552015 2118 ntBASIC18.22■□□□□ 0.51
VPS35Q96QK1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 SDHAP2-201ENST00000455183 2001 ntBASIC18.22■□□□□ 0.51
VPS35Q96QK1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 AL391807.1-203ENST00000604392 2365 ntBASIC18.22■□□□□ 0.51
VPS35Q96QK1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 KRT18P35-201ENST00000510488 1269 ntBASIC18.22■□□□□ 0.51
VPS35Q96QK1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 AC083849.1-201ENST00000615227 514 ntBASIC18.22■□□□□ 0.51
VPS35Q96QK1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AL031133.1-201ENST00000406807 723 ntBASIC18.21■□□□□ 0.51
VPS35Q96QK1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AC092597.1-201ENST00000487352 616 ntBASIC18.21■□□□□ 0.51
VPS35Q96QK1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 WIZP1-201ENST00000531444 2299 ntBASIC18.21■□□□□ 0.51
VPS35Q96QK1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 LINC01311-201ENST00000565162 1445 ntBASIC18.21■□□□□ 0.51
VPS35Q96QK1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS35Q96QK1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS35Q96QK1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 AL445228.2-201ENST00000605589 952 ntBASIC18.2■□□□□ 0.5
VPS35Q96QK1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS35Q96QK1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS35Q96QK1 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS35Q96QK1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS35Q96QK1 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms