Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRERF1Q96PN7 AL450487.1-201ENST00000426799 995 ntBASIC21.31■■□□□ 1
TRERF1Q96PN7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.31■■□□□ 1
TRERF1Q96PN7 KRT8P26-201ENST00000534154 1276 ntBASIC21.31■■□□□ 1
TRERF1Q96PN7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.31■■□□□ 1
TRERF1Q96PN7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.31■■□□□ 1
TRERF1Q96PN7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
TRERF1Q96PN7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRERF1Q96PN7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRERF1Q96PN7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRERF1Q96PN7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
TRERF1Q96PN7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.31■■□□□ 1
TRERF1Q96PN7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRERF1Q96PN7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRERF1Q96PN7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.3■■□□□ 1
TRERF1Q96PN7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.3■■□□□ 1
TRERF1Q96PN7 RNF126P1-202ENST00000569893 925 ntBASIC21.3■■□□□ 1
TRERF1Q96PN7 MIR3180-1-201ENST00000580374 94 ntBASIC21.3■■□□□ 1
TRERF1Q96PN7 MIR3180-3-201ENST00000584616 94 ntBASIC21.3■■□□□ 1
TRERF1Q96PN7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRERF1Q96PN7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
TRERF1Q96PN7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRERF1Q96PN7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
TRERF1Q96PN7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.29■■□□□ 1
TRERF1Q96PN7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
TRERF1Q96PN7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.29■■□□□ 1
TRERF1Q96PN7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.29■■□□□ 1
TRERF1Q96PN7 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 TSPY22P-201ENST00000427496 604 ntBASIC21.29■■□□□ 1
TRERF1Q96PN7 AP002383.4-201ENST00000442518 975 ntBASIC21.29■■□□□ 1
TRERF1Q96PN7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.29■■□□□ 1
TRERF1Q96PN7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.29■■□□□ 1
TRERF1Q96PN7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.29■■□□□ 1
TRERF1Q96PN7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.29■■□□□ 1
TRERF1Q96PN7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.29■■□□□ 1
TRERF1Q96PN7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.29■■□□□ 1
TRERF1Q96PN7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.29■■□□□ 1
TRERF1Q96PN7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRERF1Q96PN7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.29■■□□□ 1
TRERF1Q96PN7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 Z98044.1-201ENST00000632503 1764 ntBASIC21.28■■□□□ 1
TRERF1Q96PN7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRERF1Q96PN7 HEIH-201ENST00000623091 1652 ntBASIC21.28■■□□□ 1
TRERF1Q96PN7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.28■■□□□ 1
TRERF1Q96PN7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 AL357033.4-201ENST00000617703 1807 ntBASIC21.28■■□□□ 1
TRERF1Q96PN7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRERF1Q96PN7 PVRIG2P-201ENST00000435460 978 ntBASIC21.28■■□□□ 1
TRERF1Q96PN7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.28■■□□□ 1
TRERF1Q96PN7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.28■■□□□ 1
TRERF1Q96PN7 MIR3180-4-201ENST00000582223 153 ntBASIC21.28■■□□□ 1
TRERF1Q96PN7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TRERF1Q96PN7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.28■■□□□ 1
TRERF1Q96PN7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.28■■□□□ 1
TRERF1Q96PN7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.28■■□□□ 1
TRERF1Q96PN7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms