Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 AP006587.1-201ENST00000534129 1502 ntBASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 YBX1P10-201ENST00000444752 975 ntBASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 AC120498.8-201ENST00000614275 531 ntBASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF540Q8NDQ6 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 AL596275.1-201ENST00000423464 877 ntBASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 AP001412.1-201ENST00000608405 714 ntBASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF540Q8NDQ6 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
ZNF540Q8NDQ6 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms