Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HDDC3Q8N4P3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 AC104819.1-201ENST00000504587 486 ntBASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 AL353692.3-201ENST00000407031 1396 ntBASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HDDC3Q8N4P3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 AC099343.3-201ENST00000605834 2503 ntBASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 MIR149-201ENST00000384879 89 ntBASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 GUSBP12-201ENST00000513727 720 ntBASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 AC124864.1-201ENST00000623408 392 ntBASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HDDC3Q8N4P3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 KRT89P-201ENST00000620027 1478 ntBASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 AP002469.2-201ENST00000531724 424 ntBASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDDC3Q8N4P3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HDDC3Q8N4P3 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HDDC3Q8N4P3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 MYLKP1-201ENST00000509077 1580 ntBASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AC106795.1-205ENST00000512851 1056 ntBASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms