Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 RPS2P55-201ENST00000397318 883 ntBASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 UBE2SP1-201ENST00000450587 669 ntBASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 AC107956.1-201ENST00000494359 873 ntBASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLIP4Q8N3C7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 AC116562.2-201ENST00000507042 360 ntBASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 AC008622.2-201ENST00000617006 1229 ntBASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLIP4Q8N3C7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 ABHD17AP1-201ENST00000358206 933 ntBASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 NUDT16P1-203ENST00000513809 620 ntBASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 AC113410.3-201ENST00000623366 203 ntBASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLIP4Q8N3C7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms