Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 AC098590.1-201ENST00000468126 897 ntBASIC20.99■□□□□ 0.95
ATL3Q6DD88 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 AC026471.5-201ENST00000615068 467 ntBASIC20.99■□□□□ 0.95
ATL3Q6DD88 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 KRT18P55-202ENST00000578578 1546 ntBASIC20.99■□□□□ 0.95
ATL3Q6DD88 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.98■□□□□ 0.95
ATL3Q6DD88 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 AP003041.3-201ENST00000527151 707 ntBASIC20.98■□□□□ 0.95
ATL3Q6DD88 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ATL3Q6DD88 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ATL3Q6DD88 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 CR769767.2-201ENST00000622735 460 ntBASIC20.97■□□□□ 0.95
ATL3Q6DD88 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
ATL3Q6DD88 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATL3Q6DD88 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 AC104390.1-201ENST00000555663 520 ntBASIC20.96■□□□□ 0.95
ATL3Q6DD88 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 AC006116.8-202ENST00000587620 1550 ntBASIC20.96■□□□□ 0.95
ATL3Q6DD88 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ATL3Q6DD88 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
ATL3Q6DD88 AC092338.2-201ENST00000568827 1415 ntBASIC20.95■□□□□ 0.95
ATL3Q6DD88 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATL3Q6DD88 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.95■□□□□ 0.94
ATL3Q6DD88 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
ATL3Q6DD88 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ATL3Q6DD88 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATL3Q6DD88 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATL3Q6DD88 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.95■□□□□ 0.94
ATL3Q6DD88 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.95■□□□□ 0.94
ATL3Q6DD88 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
ATL3Q6DD88 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ATL3Q6DD88 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms