Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC12.33□□□□□ -0.44
VPS13DQ5THJ4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 AC009947.1-201ENST00000444350 727 ntBASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 AC083906.6-201ENST00000641366 219 ntBASIC12.32□□□□□ -0.44
VPS13DQ5THJ4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AL356309.3-201ENST00000624132 1934 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC145285.3-201ENST00000564603 959 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 NUS1P2-201ENST00000417358 873 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC073592.4-201ENST00000623827 446 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC211486.1-202ENST00000416371 468 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 DNAJB3-202ENST00000449667 1266 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC211476.1-201ENST00000503899 468 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 AC004817.3-201ENST00000602957 2129 ntBASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13DQ5THJ4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 AL591424.1-201ENST00000442569 1213 ntBASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13DQ5THJ4 AL356488.2-201ENST00000602755 427 ntBASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms