Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.33■■□□□ 1
CCDC144BQ3MJ40 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.33■■□□□ 1
CCDC144BQ3MJ40 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 AL512353.2-201ENST00000448759 1962 ntBASIC21.32■■□□□ 1
CCDC144BQ3MJ40 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 Z98044.1-201ENST00000632503 1764 ntBASIC21.32■■□□□ 1
CCDC144BQ3MJ40 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC144BQ3MJ40 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 AL691432.3-201ENST00000621860 400 ntBASIC21.31■■□□□ 1
CCDC144BQ3MJ40 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 FZD10-202ENST00000539839 3282 ntBASIC21.31■■□□□ 1
CCDC144BQ3MJ40 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.31■■□□□ 1
CCDC144BQ3MJ40 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.3■■□□□ 1
CCDC144BQ3MJ40 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.3■■□□□ 1
CCDC144BQ3MJ40 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms