Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN1P58418 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.43■□□□□ 0.22
CLRN1P58418 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.43■□□□□ 0.22
CLRN1P58418 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 INGX-201ENST00000359239 846 ntBASIC16.43■□□□□ 0.22
CLRN1P58418 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 AL512604.3-201ENST00000569583 964 ntBASIC16.43■□□□□ 0.22
CLRN1P58418 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN1P58418 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CLRN1P58418 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 KRT8P7-201ENST00000533003 1432 ntBASIC16.43■□□□□ 0.22
CLRN1P58418 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN1P58418 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN1P58418 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN1P58418 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
CLRN1P58418 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.42■□□□□ 0.22
CLRN1P58418 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.42■□□□□ 0.22
CLRN1P58418 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 BICD1-207ENST00000551848 1962 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 LINC01568-207ENST00000641790 1380 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CLRN1P58418 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.42■□□□□ 0.22
CLRN1P58418 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 ECEL1P2-202ENST00000465689 757 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.42■□□□□ 0.22
CLRN1P58418 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.42■□□□□ 0.22
CLRN1P58418 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 HOXB1-202ENST00000577092 1414 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CLRN1P58418 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 AL162741.1-201ENST00000565563 1558 ntBASIC16.42■□□□□ 0.22
CLRN1P58418 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.42■□□□□ 0.22
CLRN1P58418 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN1P58418 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms