Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CDH12P55289 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH12P55289 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH12P55289 AC011506.1-201ENST00000474329 610 ntBASIC17.16■□□□□ 0.34
CDH12P55289 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH12P55289 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.16■□□□□ 0.34
CDH12P55289 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH12P55289 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CDH12P55289 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
CDH12P55289 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH12P55289 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH12P55289 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDH12P55289 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.15■□□□□ 0.34
CDH12P55289 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH12P55289 CKBP1-201ENST00000565489 1086 ntBASIC17.15■□□□□ 0.34
CDH12P55289 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH12P55289 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH12P55289 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH12P55289 REXO1L9P-201ENST00000604264 2108 ntBASIC17.15■□□□□ 0.34
CDH12P55289 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH12P55289 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CDH12P55289 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.14■□□□□ 0.34
CDH12P55289 AC138028.4-201ENST00000564984 1845 ntBASIC17.14■□□□□ 0.34
CDH12P55289 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH12P55289 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH12P55289 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH12P55289 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH12P55289 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 FAM207BP-201ENST00000447172 505 ntBASIC17.14■□□□□ 0.33
CDH12P55289 B3GAT3P1-201ENST00000471720 806 ntBASIC17.14■□□□□ 0.33
CDH12P55289 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
CDH12P55289 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 MIR6786-201ENST00000616843 113 ntBASIC17.14■□□□□ 0.33
CDH12P55289 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 AC008556.1-201ENST00000610908 2040 ntBASIC17.14■□□□□ 0.33
CDH12P55289 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH12P55289 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH12P55289 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
CDH12P55289 LINC00896-202ENST00000609602 2128 ntBASIC17.14■□□□□ 0.33
CDH12P55289 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.14■□□□□ 0.33
CDH12P55289 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH12P55289 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH12P55289 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH12P55289 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH12P55289 RCC2P3-201ENST00000418112 1537 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms