Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.18■□□□□ 0.66
EPHB3P54753 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
EPHB3P54753 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.18■□□□□ 0.66
EPHB3P54753 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.18■□□□□ 0.66
EPHB3P54753 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
EPHB3P54753 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.18■□□□□ 0.66
EPHB3P54753 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.18■□□□□ 0.66
EPHB3P54753 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.18■□□□□ 0.66
EPHB3P54753 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
EPHB3P54753 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
EPHB3P54753 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
EPHB3P54753 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.17■□□□□ 0.66
EPHB3P54753 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
EPHB3P54753 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
EPHB3P54753 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.17■□□□□ 0.66
EPHB3P54753 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.17■□□□□ 0.66
EPHB3P54753 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.17■□□□□ 0.66
EPHB3P54753 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.17■□□□□ 0.66
EPHB3P54753 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.17■□□□□ 0.66
EPHB3P54753 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
EPHB3P54753 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.17■□□□□ 0.66
EPHB3P54753 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
EPHB3P54753 SDHAP2-201ENST00000455183 2001 ntBASIC19.17■□□□□ 0.66
EPHB3P54753 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.17■□□□□ 0.66
EPHB3P54753 KRT8P10-201ENST00000450021 1447 ntBASIC19.17■□□□□ 0.66
EPHB3P54753 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
EPHB3P54753 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.16■□□□□ 0.66
EPHB3P54753 AC120498.9-201ENST00000339021 3867 ntBASIC19.16■□□□□ 0.66
EPHB3P54753 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.16■□□□□ 0.66
EPHB3P54753 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 TSPY12P-201ENST00000421279 868 ntBASIC19.16■□□□□ 0.66
EPHB3P54753 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.16■□□□□ 0.66
EPHB3P54753 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.16■□□□□ 0.66
EPHB3P54753 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.16■□□□□ 0.66
EPHB3P54753 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
EPHB3P54753 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.16■□□□□ 0.66
EPHB3P54753 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
EPHB3P54753 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
EPHB3P54753 AC099343.3-201ENST00000605834 2503 ntBASIC19.15■□□□□ 0.66
EPHB3P54753 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
EPHB3P54753 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
EPHB3P54753 FDX1P1-201ENST00000449115 551 ntBASIC19.15■□□□□ 0.66
EPHB3P54753 KRT16P4-201ENST00000453883 522 ntBASIC19.15■□□□□ 0.66
EPHB3P54753 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.15■□□□□ 0.66
EPHB3P54753 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.15■□□□□ 0.66
EPHB3P54753 AP005901.3-202ENST00000581653 237 ntBASIC19.15■□□□□ 0.66
EPHB3P54753 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.15■□□□□ 0.66
EPHB3P54753 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.15■□□□□ 0.66
EPHB3P54753 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
EPHB3P54753 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
EPHB3P54753 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms