Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.25■□□□□ 0.51
CXCL12P48061 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.25■□□□□ 0.51
CXCL12P48061 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.25■□□□□ 0.51
CXCL12P48061 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.25■□□□□ 0.51
CXCL12P48061 AC012640.2-201ENST00000561606 901 ntBASIC18.25■□□□□ 0.51
CXCL12P48061 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.25■□□□□ 0.51
CXCL12P48061 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CXCL12P48061 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CXCL12P48061 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.25■□□□□ 0.51
CXCL12P48061 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CXCL12P48061 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CXCL12P48061 AC125634.1-201ENST00000438758 1403 ntBASIC18.24■□□□□ 0.51
CXCL12P48061 MTMR9LP-203ENST00000426597 1545 ntBASIC18.24■□□□□ 0.51
CXCL12P48061 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.24■□□□□ 0.51
CXCL12P48061 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.24■□□□□ 0.51
CXCL12P48061 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
CXCL12P48061 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.24■□□□□ 0.51
CXCL12P48061 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.24■□□□□ 0.51
CXCL12P48061 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.24■□□□□ 0.51
CXCL12P48061 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.24■□□□□ 0.51
CXCL12P48061 AC027796.2-201ENST00000575326 344 ntBASIC18.24■□□□□ 0.51
CXCL12P48061 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.24■□□□□ 0.51
CXCL12P48061 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.24■□□□□ 0.51
CXCL12P48061 AC008735.5-201ENST00000623544 497 ntBASIC18.24■□□□□ 0.51
CXCL12P48061 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CXCL12P48061 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.24■□□□□ 0.51
CXCL12P48061 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.24■□□□□ 0.51
CXCL12P48061 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CXCL12P48061 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.23■□□□□ 0.51
CXCL12P48061 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.23■□□□□ 0.51
CXCL12P48061 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CXCL12P48061 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.23■□□□□ 0.51
CXCL12P48061 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.23■□□□□ 0.51
CXCL12P48061 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.23■□□□□ 0.51
CXCL12P48061 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.23■□□□□ 0.51
CXCL12P48061 AC004967.1-201ENST00000453589 447 ntBASIC18.23■□□□□ 0.51
CXCL12P48061 RNA5SP416-201ENST00000516838 111 ntBASIC18.23■□□□□ 0.51
CXCL12P48061 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.23■□□□□ 0.51
CXCL12P48061 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 LINC02084-201ENST00000606069 1096 ntBASIC18.23■□□□□ 0.51
CXCL12P48061 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.23■□□□□ 0.51
CXCL12P48061 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CXCL12P48061 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.23■□□□□ 0.51
CXCL12P48061 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CXCL12P48061 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.22■□□□□ 0.51
CXCL12P48061 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
CXCL12P48061 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CXCL12P48061 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CXCL12P48061 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CXCL12P48061 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.22■□□□□ 0.51
CXCL12P48061 AC105339.3-201ENST00000560043 636 ntBASIC18.22■□□□□ 0.51
CXCL12P48061 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 AC025062.2-201ENST00000605477 670 ntBASIC18.22■□□□□ 0.51
CXCL12P48061 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 AL139288.1-201ENST00000623748 933 ntBASIC18.22■□□□□ 0.51
CXCL12P48061 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CXCL12P48061 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CXCL12P48061 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms