Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 Z98044.1-201ENST00000632503 1764 ntBASIC17.31■□□□□ 0.36
SOX3P41225 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 RNF152P1-201ENST00000397754 604 ntBASIC17.31■□□□□ 0.36
SOX3P41225 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.31■□□□□ 0.36
SOX3P41225 KRT18P35-201ENST00000510488 1269 ntBASIC17.31■□□□□ 0.36
SOX3P41225 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 AC140113.3-201ENST00000605663 199 ntBASIC17.31■□□□□ 0.36
SOX3P41225 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 AC011558.1-201ENST00000623459 338 ntBASIC17.31■□□□□ 0.36
SOX3P41225 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 RCC2P3-201ENST00000418112 1537 ntBASIC17.31■□□□□ 0.36
SOX3P41225 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SOX3P41225 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SOX3P41225 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.3■□□□□ 0.36
SOX3P41225 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.3■□□□□ 0.36
SOX3P41225 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SOX3P41225 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SOX3P41225 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX3P41225 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX3P41225 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX3P41225 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.29■□□□□ 0.36
SOX3P41225 AC093525.10-201ENST00000625130 1569 ntBASIC17.29■□□□□ 0.36
SOX3P41225 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 AP000523.1-201ENST00000398242 1049 ntBASIC17.29■□□□□ 0.36
SOX3P41225 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.29■□□□□ 0.36
SOX3P41225 TSPY5P-201ENST00000426936 936 ntBASIC17.29■□□□□ 0.36
SOX3P41225 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 AC063952.2-201ENST00000498792 1227 ntBASIC17.29■□□□□ 0.36
SOX3P41225 AC022616.7-201ENST00000525383 220 ntBASIC17.29■□□□□ 0.36
SOX3P41225 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.29■□□□□ 0.36
SOX3P41225 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.29■□□□□ 0.36
SOX3P41225 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.29■□□□□ 0.36
SOX3P41225 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.29■□□□□ 0.36
SOX3P41225 MIR3180-5-201ENST00000583743 153 ntBASIC17.29■□□□□ 0.36
SOX3P41225 NTF6B-201ENST00000591913 560 ntBASIC17.29■□□□□ 0.36
SOX3P41225 AL031432.5-201ENST00000641059 760 ntBASIC17.29■□□□□ 0.36
SOX3P41225 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SOX3P41225 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.29■□□□□ 0.36
SOX3P41225 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX3P41225 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX3P41225 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX3P41225 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms