Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.51■□□□□ 0.55
CCNFP41002 MYLKP1-201ENST00000509077 1580 ntBASIC18.51■□□□□ 0.55
CCNFP41002 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCNFP41002 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 RCC2P3-201ENST00000418112 1537 ntBASIC18.5■□□□□ 0.55
CCNFP41002 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.5■□□□□ 0.55
CCNFP41002 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 CRYGFP-201ENST00000418459 633 ntBASIC18.5■□□□□ 0.55
CCNFP41002 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.5■□□□□ 0.55
CCNFP41002 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNFP41002 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNFP41002 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNFP41002 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNFP41002 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.49■□□□□ 0.55
CCNFP41002 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.49■□□□□ 0.55
CCNFP41002 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CCNFP41002 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.49■□□□□ 0.55
CCNFP41002 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 CA15P1-201ENST00000481698 905 ntBASIC18.49■□□□□ 0.55
CCNFP41002 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.49■□□□□ 0.55
CCNFP41002 FITM1-202ENST00000559294 800 ntBASIC18.49■□□□□ 0.55
CCNFP41002 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
CCNFP41002 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.49■□□□□ 0.55
CCNFP41002 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.49■□□□□ 0.55
CCNFP41002 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CCNFP41002 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.49■□□□□ 0.55
CCNFP41002 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNFP41002 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNFP41002 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNFP41002 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNFP41002 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNFP41002 REXO1L9P-201ENST00000604264 2108 ntBASIC18.48■□□□□ 0.55
CCNFP41002 AP000525.1-201ENST00000608286 694 ntBASIC18.48■□□□□ 0.55
CCNFP41002 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.48■□□□□ 0.55
CCNFP41002 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 FLJ13224-201ENST00000313737 1514 ntBASIC18.48■□□□□ 0.55
CCNFP41002 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNFP41002 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCNFP41002 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.47■□□□□ 0.55
CCNFP41002 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.47■□□□□ 0.55
CCNFP41002 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNFP41002 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.47■□□□□ 0.55
CCNFP41002 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms