Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC30.69■■■□□ 2.5
CUX1P39880 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX1P39880 ADK-206ENST00000541550 2222 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX1P39880 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC30.69■■■□□ 2.5
CUX1P39880 LINC01126-201ENST00000623515 1646 ntBASIC30.69■■■□□ 2.5
CUX1P39880 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC30.69■■■□□ 2.5
CUX1P39880 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
CUX1P39880 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC30.68■■■□□ 2.5
CUX1P39880 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC30.68■■■□□ 2.5
CUX1P39880 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC30.68■■■□□ 2.5
CUX1P39880 AL355385.1-201ENST00000606123 409 ntBASIC30.68■■■□□ 2.5
CUX1P39880 CAND2-206ENST00000626378 333 ntTSL 5 BASIC30.68■■■□□ 2.5
CUX1P39880 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
CUX1P39880 AL161938.1-201ENST00000569833 2180 ntBASIC30.68■■■□□ 2.5
CUX1P39880 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 RPS2P28-201ENST00000314255 741 ntBASIC30.68■■■□□ 2.5
CUX1P39880 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CUX1P39880 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CUX1P39880 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC30.67■■■□□ 2.5
CUX1P39880 CTNS-203ENST00000399306 803 ntTSL 3 BASIC30.67■■■□□ 2.5
CUX1P39880 HS6ST1P1-201ENST00000481504 1234 ntBASIC30.67■■■□□ 2.5
CUX1P39880 RPS29-206ENST00000557111 488 ntTSL 2 BASIC30.67■■■□□ 2.5
CUX1P39880 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC30.67■■■□□ 2.5
CUX1P39880 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC30.67■■■□□ 2.5
CUX1P39880 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
CUX1P39880 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
CUX1P39880 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC30.66■■■□□ 2.5
CUX1P39880 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC30.66■■■□□ 2.5
CUX1P39880 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC30.66■■■□□ 2.5
CUX1P39880 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC30.66■■■□□ 2.5
CUX1P39880 COX5A-204ENST00000567270 579 ntTSL 3 BASIC30.66■■■□□ 2.5
CUX1P39880 RNF151-202ENST00000569210 853 ntTSL 2 BASIC30.66■■■□□ 2.5
CUX1P39880 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 MTDHP4-201ENST00000600287 670 ntBASIC30.66■■■□□ 2.5
CUX1P39880 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC30.66■■■□□ 2.5
CUX1P39880 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC30.66■■■□□ 2.5
CUX1P39880 AL049812.1-201ENST00000432563 2267 ntBASIC30.66■■■□□ 2.5
CUX1P39880 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
CUX1P39880 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CUX1P39880 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX1P39880 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX1P39880 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CUX1P39880 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC30.65■■■□□ 2.5
CUX1P39880 AC004832.2-201ENST00000426397 482 ntBASIC30.65■■■□□ 2.5
CUX1P39880 AC007967.2-201ENST00000432613 625 ntBASIC30.65■■■□□ 2.5
CUX1P39880 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC30.65■■■□□ 2.5
CUX1P39880 UNC93B6-202ENST00000528242 690 ntBASIC30.65■■■□□ 2.5
CUX1P39880 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC30.65■■■□□ 2.5
CUX1P39880 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC30.65■■■□□ 2.5
CUX1P39880 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CUX1P39880 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
CUX1P39880 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC30.64■■■□□ 2.5
CUX1P39880 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC30.64■■■□□ 2.5
CUX1P39880 KRT18P27-201ENST00000427733 1299 ntBASIC30.64■■■□□ 2.5
CUX1P39880 KRT18P65-201ENST00000439811 1286 ntBASIC30.64■■■□□ 2.5
CUX1P39880 KRT18P3-201ENST00000451602 1288 ntBASIC30.64■■■□□ 2.5
CUX1P39880 AC040169.1-201ENST00000565382 521 ntBASIC30.64■■■□□ 2.5
CUX1P39880 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
CUX1P39880 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC30.64■■■□□ 2.5
CUX1P39880 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
CUX1P39880 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
CUX1P39880 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
CUX1P39880 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC30.64■■■□□ 2.49
CUX1P39880 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
CUX1P39880 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 AC004967.1-201ENST00000453589 447 ntBASIC30.63■■■□□ 2.49
CUX1P39880 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 AL139424.1-201ENST00000607572 797 ntBASIC30.63■■■□□ 2.49
CUX1P39880 MYLKP1-201ENST00000509077 1580 ntBASIC30.63■■■□□ 2.49
CUX1P39880 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
CUX1P39880 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
CUX1P39880 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CUX1P39880 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms