Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCA1P28370 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SMARCA1P28370 AC099343.3-201ENST00000605834 2503 ntBASIC21.04■□□□□ 0.96
SMARCA1P28370 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCA1P28370 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCA1P28370 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 BX276092.5-203ENST00000456199 560 ntBASIC21.04■□□□□ 0.96
SMARCA1P28370 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.04■□□□□ 0.96
SMARCA1P28370 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.04■□□□□ 0.96
SMARCA1P28370 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SMARCA1P28370 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.04■□□□□ 0.96
SMARCA1P28370 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SMARCA1P28370 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.04■□□□□ 0.96
SMARCA1P28370 AC093677.2-201ENST00000600169 1863 ntBASIC21.04■□□□□ 0.96
SMARCA1P28370 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMARCA1P28370 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCA1P28370 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.03■□□□□ 0.96
SMARCA1P28370 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCA1P28370 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SMARCA1P28370 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 PHGDH-209ENST00000641074 1780 ntBASIC21.03■□□□□ 0.96
SMARCA1P28370 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
SMARCA1P28370 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SMARCA1P28370 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.03■□□□□ 0.96
SMARCA1P28370 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 AC090616.6-201ENST00000582640 721 ntBASIC21.03■□□□□ 0.96
SMARCA1P28370 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 AC093010.1-201ENST00000473625 1624 ntBASIC21.03■□□□□ 0.96
SMARCA1P28370 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.03■□□□□ 0.96
SMARCA1P28370 LINC00167-201ENST00000530583 1419 ntBASIC21.03■□□□□ 0.96
SMARCA1P28370 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMARCA1P28370 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SMARCA1P28370 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SMARCA1P28370 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCA1P28370 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.02■□□□□ 0.96
SMARCA1P28370 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.02■□□□□ 0.96
SMARCA1P28370 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 AC069148.1-201ENST00000608741 768 ntBASIC21.02■□□□□ 0.96
SMARCA1P28370 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCA1P28370 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCA1P28370 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMARCA1P28370 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.02■□□□□ 0.96
SMARCA1P28370 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SMARCA1P28370 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMARCA1P28370 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMARCA1P28370 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.02■□□□□ 0.95
SMARCA1P28370 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
SMARCA1P28370 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCA1P28370 CHCHD2P8-201ENST00000429873 447 ntBASIC21.01■□□□□ 0.95
SMARCA1P28370 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCA1P28370 ATP5G2P1-201ENST00000433580 426 ntBASIC21.01■□□□□ 0.95
SMARCA1P28370 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCA1P28370 RN7SL606P-201ENST00000472779 293 ntBASIC21.01■□□□□ 0.95
SMARCA1P28370 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCA1P28370 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms