Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A2P12110 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL6A2P12110 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A2P12110 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A2P12110 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A2P12110 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.18■□□□□ 0.5
COL6A2P12110 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A2P12110 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A2P12110 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A2P12110 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
COL6A2P12110 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL6A2P12110 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 AC036111.1-201ENST00000533973 1582 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 KRT8P7-201ENST00000533003 1432 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 HOXB1-202ENST00000577092 1414 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 MIR149-201ENST00000384879 89 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.17■□□□□ 0.5
COL6A2P12110 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A2P12110 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A2P12110 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.17■□□□□ 0.5
COL6A2P12110 AC009102.3-201ENST00000623118 1491 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 AC012313.1-201ENST00000593393 3059 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
COL6A2P12110 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 LINC00896-202ENST00000609602 2128 ntBASIC18.17■□□□□ 0.5
COL6A2P12110 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A2P12110 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A2P12110 SDHAP2-201ENST00000455183 2001 ntBASIC18.16■□□□□ 0.5
COL6A2P12110 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL6A2P12110 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A2P12110 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A2P12110 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 AP001412.1-201ENST00000608405 714 ntBASIC18.16■□□□□ 0.5
COL6A2P12110 ITM2C-210ENST00000620962 501 ntBASIC18.16■□□□□ 0.5
COL6A2P12110 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A2P12110 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A2P12110 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A2P12110 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A2P12110 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.15■□□□□ 0.5
COL6A2P12110 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 FAM201B-201ENST00000458407 597 ntBASIC18.15■□□□□ 0.5
COL6A2P12110 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.15■□□□□ 0.5
COL6A2P12110 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.15■□□□□ 0.5
COL6A2P12110 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL6A2P12110 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A2P12110 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.15■□□□□ 0.5
COL6A2P12110 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A2P12110 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.15■□□□□ 0.5
COL6A2P12110 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A2P12110 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms