Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HOXC4P09017 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HOXC4P09017 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 POM121L3P-201ENST00000419331 1163 ntBASIC17.88■□□□□ 0.45
HOXC4P09017 AC111152.3-201ENST00000569699 673 ntBASIC17.88■□□□□ 0.45
HOXC4P09017 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HOXC4P09017 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC4P09017 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HOXC4P09017 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 LINC00167-201ENST00000530583 1419 ntBASIC17.88■□□□□ 0.45
HOXC4P09017 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC4P09017 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.87■□□□□ 0.45
HOXC4P09017 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HOXC4P09017 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
HOXC4P09017 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
HOXC4P09017 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC4P09017 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.87■□□□□ 0.45
HOXC4P09017 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC4P09017 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC4P09017 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC4P09017 AP005901.3-202ENST00000581653 237 ntBASIC17.87■□□□□ 0.45
HOXC4P09017 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
HOXC4P09017 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.87■□□□□ 0.45
HOXC4P09017 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 NSUN5P1-202ENST00000421140 1535 ntBASIC17.87■□□□□ 0.45
HOXC4P09017 NSUN5P2-203ENST00000457352 1529 ntBASIC17.87■□□□□ 0.45
HOXC4P09017 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC4P09017 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC4P09017 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC4P09017 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HOXC4P09017 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 AC091304.2-201ENST00000564639 760 ntBASIC17.86■□□□□ 0.45
HOXC4P09017 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HOXC4P09017 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC4P09017 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC4P09017 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC4P09017 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HOXC4P09017 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC4P09017 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.85■□□□□ 0.45
HOXC4P09017 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HOXC4P09017 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HOXC4P09017 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.85■□□□□ 0.45
HOXC4P09017 KRT16P4-201ENST00000453883 522 ntBASIC17.85■□□□□ 0.45
HOXC4P09017 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.85■□□□□ 0.45
HOXC4P09017 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.85■□□□□ 0.45
HOXC4P09017 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.85■□□□□ 0.45
HOXC4P09017 KRT18P31-201ENST00000506277 1292 ntBASIC17.85■□□□□ 0.45
HOXC4P09017 FOSL1P1-201ENST00000511041 816 ntBASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms