Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.4■■□□□ 1.02
COL2A1P02458 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
COL2A1P02458 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL2A1P02458 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.4■■□□□ 1.02
COL2A1P02458 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.39■■□□□ 1.02
COL2A1P02458 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.39■■□□□ 1.02
COL2A1P02458 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.39■■□□□ 1.02
COL2A1P02458 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 AC120114.3-201ENST00000611923 658 ntBASIC21.39■■□□□ 1.02
COL2A1P02458 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
COL2A1P02458 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.39■■□□□ 1.02
COL2A1P02458 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL2A1P02458 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL2A1P02458 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL2A1P02458 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.39■■□□□ 1.01
COL2A1P02458 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
COL2A1P02458 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.39■■□□□ 1.01
COL2A1P02458 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL2A1P02458 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL2A1P02458 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.39■■□□□ 1.01
COL2A1P02458 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.39■■□□□ 1.01
COL2A1P02458 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL2A1P02458 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL2A1P02458 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.38■■□□□ 1.01
COL2A1P02458 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.38■■□□□ 1.01
COL2A1P02458 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.38■■□□□ 1.01
COL2A1P02458 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.38■■□□□ 1.01
COL2A1P02458 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 FAM197Y8-203ENST00000450145 560 ntBASIC21.38■■□□□ 1.01
COL2A1P02458 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.38■■□□□ 1.01
COL2A1P02458 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL2A1P02458 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.38■■□□□ 1.01
COL2A1P02458 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 AL031598.1-201ENST00000561511 1773 ntBASIC21.37■■□□□ 1.01
COL2A1P02458 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.37■■□□□ 1.01
COL2A1P02458 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.37■■□□□ 1.01
COL2A1P02458 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL2A1P02458 AC112698.1-201ENST00000510299 916 ntBASIC21.37■■□□□ 1.01
COL2A1P02458 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL2A1P02458 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.37■■□□□ 1.01
COL2A1P02458 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.37■■□□□ 1.01
COL2A1P02458 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC21.37■■□□□ 1.01
COL2A1P02458 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.37■■□□□ 1.01
COL2A1P02458 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.37■■□□□ 1.01
COL2A1P02458 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.37■■□□□ 1.01
COL2A1P02458 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
COL2A1P02458 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
COL2A1P02458 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.36■■□□□ 1.01
COL2A1P02458 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.36■■□□□ 1.01
COL2A1P02458 AC132008.2-207ENST00000454517 770 ntBASIC21.36■■□□□ 1.01
COL2A1P02458 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL2A1P02458 AF186996.4-201ENST00000467186 377 ntBASIC21.36■■□□□ 1.01
COL2A1P02458 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.36■■□□□ 1.01
COL2A1P02458 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.36■■□□□ 1.01
COL2A1P02458 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
COL2A1P02458 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL2A1P02458 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.36■■□□□ 1.01
COL2A1P02458 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL2A1P02458 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.36■■□□□ 1.01
COL2A1P02458 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.36■■□□□ 1.01
COL2A1P02458 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms