Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX3O95343 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX3O95343 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX3O95343 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX3O95343 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX3O95343 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX3O95343 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.98■□□□□ 0.47
SIX3O95343 AC008550.1-201ENST00000511500 884 ntBASIC17.98■□□□□ 0.47
SIX3O95343 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.98■□□□□ 0.47
SIX3O95343 AP003041.3-201ENST00000527151 707 ntBASIC17.98■□□□□ 0.47
SIX3O95343 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.98■□□□□ 0.47
SIX3O95343 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX3O95343 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX3O95343 AL023803.3-201ENST00000615559 522 ntBASIC17.98■□□□□ 0.47
SIX3O95343 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 AL096828.2-201ENST00000567259 1965 ntBASIC17.98■□□□□ 0.47
SIX3O95343 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SIX3O95343 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX3O95343 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX3O95343 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.98■□□□□ 0.47
SIX3O95343 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 GMCL1P1-201ENST00000463439 1581 ntBASIC17.97■□□□□ 0.47
SIX3O95343 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.97■□□□□ 0.47
SIX3O95343 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 AL390955.1-201ENST00000428694 934 ntBASIC17.97■□□□□ 0.47
SIX3O95343 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.97■□□□□ 0.47
SIX3O95343 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.97■□□□□ 0.47
SIX3O95343 AP000525.1-201ENST00000608286 694 ntBASIC17.97■□□□□ 0.47
SIX3O95343 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX3O95343 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SIX3O95343 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX3O95343 PHGDH-209ENST00000641074 1780 ntBASIC17.96■□□□□ 0.47
SIX3O95343 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.96■□□□□ 0.47
SIX3O95343 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 SDHAP2-201ENST00000455183 2001 ntBASIC17.96■□□□□ 0.47
SIX3O95343 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
SIX3O95343 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 UNC93B2-201ENST00000285383 730 ntBASIC17.96■□□□□ 0.47
SIX3O95343 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.96■□□□□ 0.47
SIX3O95343 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.96■□□□□ 0.47
SIX3O95343 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SIX3O95343 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX3O95343 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX3O95343 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms