Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PHGDHO43175 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PHGDHO43175 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PHGDHO43175 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
PHGDHO43175 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
PHGDHO43175 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PHGDHO43175 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.32■□□□□ 0.52
PHGDHO43175 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PHGDHO43175 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.32■□□□□ 0.52
PHGDHO43175 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
PHGDHO43175 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.32■□□□□ 0.52
PHGDHO43175 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.31■□□□□ 0.52
PHGDHO43175 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.31■□□□□ 0.52
PHGDHO43175 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.31■□□□□ 0.52
PHGDHO43175 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.31■□□□□ 0.52
PHGDHO43175 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PHGDHO43175 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.31■□□□□ 0.52
PHGDHO43175 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PHGDHO43175 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.31■□□□□ 0.52
PHGDHO43175 AC034236.2-201ENST00000606662 1610 ntBASIC18.31■□□□□ 0.52
PHGDHO43175 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.3■□□□□ 0.52
PHGDHO43175 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.3■□□□□ 0.52
PHGDHO43175 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 AL355355.2-201ENST00000442321 338 ntBASIC18.3■□□□□ 0.52
PHGDHO43175 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.3■□□□□ 0.52
PHGDHO43175 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.3■□□□□ 0.52
PHGDHO43175 AC036111.1-201ENST00000533973 1582 ntBASIC18.3■□□□□ 0.52
PHGDHO43175 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PHGDHO43175 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PHGDHO43175 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 AC138028.4-201ENST00000564984 1845 ntBASIC18.29■□□□□ 0.52
PHGDHO43175 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 AP000593.1-201ENST00000393668 712 ntBASIC18.29■□□□□ 0.52
PHGDHO43175 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PHGDHO43175 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.29■□□□□ 0.52
PHGDHO43175 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.29■□□□□ 0.52
PHGDHO43175 Z99916.2-201ENST00000604037 246 ntBASIC18.29■□□□□ 0.52
PHGDHO43175 AP001412.1-201ENST00000608405 714 ntBASIC18.29■□□□□ 0.52
PHGDHO43175 AC026471.5-201ENST00000615068 467 ntBASIC18.29■□□□□ 0.52
PHGDHO43175 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PHGDHO43175 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PHGDHO43175 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PHGDHO43175 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PHGDHO43175 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.28■□□□□ 0.52
PHGDHO43175 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.28■□□□□ 0.52
PHGDHO43175 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.28■□□□□ 0.52
PHGDHO43175 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 CA15P1-201ENST00000481698 905 ntBASIC18.28■□□□□ 0.52
PHGDHO43175 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PHGDHO43175 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms