Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.08■□□□□ 0.81
CLDN3O15551 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLDN3O15551 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.08■□□□□ 0.8
CLDN3O15551 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLDN3O15551 AC126763.1-201ENST00000552015 2118 ntBASIC20.08■□□□□ 0.8
CLDN3O15551 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CLDN3O15551 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CLDN3O15551 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CLDN3O15551 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.07■□□□□ 0.8
CLDN3O15551 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 SPDYE13P-201ENST00000445314 798 ntBASIC20.07■□□□□ 0.8
CLDN3O15551 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.07■□□□□ 0.8
CLDN3O15551 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.07■□□□□ 0.8
CLDN3O15551 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.07■□□□□ 0.8
CLDN3O15551 AL358472.4-201ENST00000633140 710 ntBASIC20.07■□□□□ 0.8
CLDN3O15551 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CLDN3O15551 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.07■□□□□ 0.8
CLDN3O15551 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CLDN3O15551 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.07■□□□□ 0.8
CLDN3O15551 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CLDN3O15551 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.07■□□□□ 0.8
CLDN3O15551 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.07■□□□□ 0.8
CLDN3O15551 SDHAP2-201ENST00000455183 2001 ntBASIC20.07■□□□□ 0.8
CLDN3O15551 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.07■□□□□ 0.8
CLDN3O15551 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLDN3O15551 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CLDN3O15551 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CLDN3O15551 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 AC005332.1-201ENST00000577698 1310 ntBASIC20.06■□□□□ 0.8
CLDN3O15551 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CLDN3O15551 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 PCED1CP-201ENST00000419887 785 ntBASIC20.06■□□□□ 0.8
CLDN3O15551 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.06■□□□□ 0.8
CLDN3O15551 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
CLDN3O15551 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.06■□□□□ 0.8
CLDN3O15551 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLDN3O15551 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.06■□□□□ 0.8
CLDN3O15551 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.06■□□□□ 0.8
CLDN3O15551 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.05■□□□□ 0.8
CLDN3O15551 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.05■□□□□ 0.8
CLDN3O15551 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CLDN3O15551 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.05■□□□□ 0.8
CLDN3O15551 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.05■□□□□ 0.8
CLDN3O15551 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CLDN3O15551 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.05■□□□□ 0.8
CLDN3O15551 AC091076.1-201ENST00000610741 619 ntBASIC20.05■□□□□ 0.8
CLDN3O15551 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.05■□□□□ 0.8
CLDN3O15551 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CLDN3O15551 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 AC104581.1-202ENST00000635932 2618 ntBASIC20.05■□□□□ 0.8
CLDN3O15551 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CLDN3O15551 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLDN3O15551 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
CLDN3O15551 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.04■□□□□ 0.8
CLDN3O15551 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.04■□□□□ 0.8
CLDN3O15551 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.04■□□□□ 0.8
CLDN3O15551 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.04■□□□□ 0.8
CLDN3O15551 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 MIR662-201ENST00000384847 95 ntBASIC20.04■□□□□ 0.8
CLDN3O15551 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.04■□□□□ 0.8
CLDN3O15551 AL645929.1-201ENST00000420084 975 ntBASIC20.04■□□□□ 0.8
CLDN3O15551 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.04■□□□□ 0.8
CLDN3O15551 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.04■□□□□ 0.8
CLDN3O15551 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CLDN3O15551 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.04■□□□□ 0.8
CLDN3O15551 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLDN3O15551 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms