Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SDCBPO00560 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
SDCBPO00560 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SDCBPO00560 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SDCBPO00560 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC15.66■□□□□ 0.1
SDCBPO00560 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.66■□□□□ 0.1
SDCBPO00560 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.66■□□□□ 0.1
SDCBPO00560 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SDCBPO00560 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.66■□□□□ 0.1
SDCBPO00560 RARRES2P10-201ENST00000564312 460 ntBASIC15.66■□□□□ 0.1
SDCBPO00560 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.66■□□□□ 0.1
SDCBPO00560 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SDCBPO00560 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SDCBPO00560 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
SDCBPO00560 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.65■□□□□ 0.1
SDCBPO00560 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 AF186192.3-201ENST00000583427 947 ntBASIC15.65■□□□□ 0.1
SDCBPO00560 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 AC068587.9-201ENST00000641814 219 ntBASIC15.65■□□□□ 0.1
SDCBPO00560 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SDCBPO00560 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.65■□□□□ 0.1
SDCBPO00560 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SDCBPO00560 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 GNAS-203ENST00000306120 1878 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms