Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 AC011506.1-201ENST00000474329 610 ntBASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 AC026271.3-201ENST00000571884 352 ntBASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM49D1C9J1S8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 GMCL1P1-201ENST00000463439 1581 ntBASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM49D1C9J1S8 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 MIR564-202ENST00000385049 94 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AP000593.1-201ENST00000393668 712 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AL353807.1-201ENST00000427475 662 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AC073648.6-201ENST00000641589 218 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 OR6D1P-202ENST00000641007 5290 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 AC099343.3-201ENST00000605834 2503 ntBASIC18.43■□□□□ 0.54
TRIM49D1C9J1S8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
TRIM49D1C9J1S8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms