Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMIM28A0A1B0GU29 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 PRELID1P1-202ENST00000567272 903 ntBASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 AC018445.3-201ENST00000624177 1945 ntBASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.66■□□□□ 0.74
SMIM28A0A1B0GU29 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 NUS1P1-201ENST00000446295 882 ntBASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 AC233702.3-201ENST00000578656 1387 ntBASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 AC098818.2-201ENST00000564925 2320 ntBASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMIM28A0A1B0GU29 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMIM28A0A1B0GU29 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 AC012615.1-201ENST00000565797 1299 ntBASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 BX323043.1-201ENST00000641006 1765 ntBASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.64■□□□□ 0.73
SMIM28A0A1B0GU29 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms