Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 MIR3180-3-201ENST00000584616 94 ntBASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 GPR32P1-201ENST00000601788 811 ntBASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 AC024563.2-201ENST00000603282 481 ntBASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 AC099343.3-201ENST00000605834 2503 ntBASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRAV40A0A0B4J280 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 AL390719.2-201ENST00000606993 987 ntBASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV40A0A0B4J280 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 TOB2P1-201ENST00000469761 992 ntBASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 AP000867.3-201ENST00000524675 377 ntBASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 AC020763.4-201ENST00000623414 4170 ntBASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
TRAV40A0A0B4J280 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
TRAV40A0A0B4J280 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
TRAV40A0A0B4J280 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.96□□□□□ -0.02
TRAV40A0A0B4J280 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRAV40A0A0B4J280 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms