Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 AL355877.3-201ENST00000622820 899 ntBASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHGA1Q9Y5H4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHGA1Q9Y5H4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHGA1Q9Y5H4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHGA1Q9Y5H4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHGA1Q9Y5H4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHGA1Q9Y5H4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 AC113404.2-201ENST00000507884 177 ntBASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHGA1Q9Y5H4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 MIR7706-201ENST00000613747 67 ntBASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 FAM215A-202ENST00000632077 792 ntBASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 AC138932.1-201ENST00000534164 6830 ntBASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 Z98044.1-201ENST00000632503 1764 ntBASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 IRX1P1-201ENST00000438849 1838 ntBASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDHGA1Q9Y5H4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 TREX1-205ENST00000625293 1783 ntBASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHGA1Q9Y5H4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms