Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.25■□□□□ 0.51
TRIM39Q9HCM9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 LINC01311-201ENST00000565162 1445 ntBASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 AL499627.1-201ENST00000569373 2188 ntBASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 AC093503.3-201ENST00000624917 2352 ntBASIC18.24■□□□□ 0.51
TRIM39Q9HCM9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 HBZP1-201ENST00000354915 429 ntBASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 AC092597.1-201ENST00000487352 616 ntBASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TRIM39Q9HCM9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 PVRIG2P-201ENST00000435460 978 ntBASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 ZNF444P1-201ENST00000559497 298 ntBASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AC079602.3-201ENST00000623931 403 ntBASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AL121956.5-201ENST00000625261 221 ntBASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM39Q9HCM9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms