Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LIME1Q9H400 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.16■□□□□ 0.18
LIME1Q9H400 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.15■□□□□ 0.18
LIME1Q9H400 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
LIME1Q9H400 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LIME1Q9H400 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.15■□□□□ 0.18
LIME1Q9H400 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.15■□□□□ 0.18
LIME1Q9H400 FP475955.4-201ENST00000623131 1990 ntBASIC16.15■□□□□ 0.18
LIME1Q9H400 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.15■□□□□ 0.18
LIME1Q9H400 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LIME1Q9H400 AP000867.3-201ENST00000524675 377 ntBASIC16.15■□□□□ 0.18
LIME1Q9H400 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.15■□□□□ 0.18
LIME1Q9H400 AL160237.2-201ENST00000556165 472 ntBASIC16.15■□□□□ 0.18
LIME1Q9H400 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.15■□□□□ 0.18
LIME1Q9H400 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
LIME1Q9H400 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.15■□□□□ 0.18
LIME1Q9H400 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIME1Q9H400 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.14■□□□□ 0.17
LIME1Q9H400 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
LIME1Q9H400 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LIME1Q9H400 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 AC036111.1-201ENST00000533973 1582 ntBASIC16.14■□□□□ 0.17
LIME1Q9H400 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.14■□□□□ 0.17
LIME1Q9H400 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.14■□□□□ 0.17
LIME1Q9H400 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
LIME1Q9H400 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 CHCHD2P8-201ENST00000429873 447 ntBASIC16.14■□□□□ 0.17
LIME1Q9H400 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.14■□□□□ 0.17
LIME1Q9H400 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.14■□□□□ 0.17
LIME1Q9H400 FOSL1P1-201ENST00000511041 816 ntBASIC16.14■□□□□ 0.17
LIME1Q9H400 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.14■□□□□ 0.17
LIME1Q9H400 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.14■□□□□ 0.17
LIME1Q9H400 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
LIME1Q9H400 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LIME1Q9H400 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 LETM1P2-201ENST00000597330 2178 ntBASIC16.14■□□□□ 0.17
LIME1Q9H400 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.14■□□□□ 0.17
LIME1Q9H400 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIME1Q9H400 ZNF815P-204ENST00000434898 1737 ntBASIC16.14■□□□□ 0.17
LIME1Q9H400 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.14■□□□□ 0.17
LIME1Q9H400 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LIME1Q9H400 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 AP000593.1-201ENST00000393668 712 ntBASIC16.13■□□□□ 0.17
LIME1Q9H400 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.13■□□□□ 0.17
LIME1Q9H400 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LIME1Q9H400 AC091304.2-201ENST00000564639 760 ntBASIC16.13■□□□□ 0.17
LIME1Q9H400 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
LIME1Q9H400 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.13■□□□□ 0.17
LIME1Q9H400 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.13■□□□□ 0.17
LIME1Q9H400 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LIME1Q9H400 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIME1Q9H400 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.13■□□□□ 0.17
LIME1Q9H400 AL031598.1-201ENST00000561511 1773 ntBASIC16.13■□□□□ 0.17
LIME1Q9H400 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms