Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS35Q96QK1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
VPS35Q96QK1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VPS35Q96QK1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.27■□□□□ 0.51
VPS35Q96QK1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.27■□□□□ 0.51
VPS35Q96QK1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
VPS35Q96QK1 AC009102.3-201ENST00000623118 1491 ntBASIC18.26■□□□□ 0.51
VPS35Q96QK1 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 AC112907.2-201ENST00000448639 330 ntBASIC18.26■□□□□ 0.51
VPS35Q96QK1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VPS35Q96QK1 AC090340.1-201ENST00000620778 4980 ntBASIC18.26■□□□□ 0.51
VPS35Q96QK1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS35Q96QK1 AC073592.3-201ENST00000625118 1834 ntBASIC18.26■□□□□ 0.51
VPS35Q96QK1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 NTF6B-201ENST00000591913 560 ntBASIC18.25■□□□□ 0.51
VPS35Q96QK1 HYMAI.1-201ENST00000620949 238 ntBASIC18.25■□□□□ 0.51
VPS35Q96QK1 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS35Q96QK1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS35Q96QK1 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 AL671277.2-201ENST00000458060 996 ntBASIC18.24■□□□□ 0.51
VPS35Q96QK1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.24■□□□□ 0.51
VPS35Q96QK1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS35Q96QK1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VPS35Q96QK1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 HBZP1-201ENST00000354915 429 ntBASIC18.23■□□□□ 0.51
VPS35Q96QK1 HLA-F-220ENST00000434407 884 ntBASIC18.23■□□□□ 0.51
VPS35Q96QK1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 AL136038.4-201ENST00000603606 1261 ntBASIC18.23■□□□□ 0.51
VPS35Q96QK1 AC079602.3-201ENST00000623931 403 ntBASIC18.23■□□□□ 0.51
VPS35Q96QK1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS35Q96QK1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
VPS35Q96QK1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS35Q96QK1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS35Q96QK1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms