Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC116562.2-201ENST00000507042 360 ntBASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 NUDT16P1-203ENST00000513809 620 ntBASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 MIR4674-201ENST00000582457 87 ntBASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 AL135905.2-201ENST00000584934 1404 ntBASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ATG4AQ8WYN0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AC097488.1-201ENST00000507834 756 ntBASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AL096828.2-201ENST00000567259 1965 ntBASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ATG4AQ8WYN0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ATG4AQ8WYN0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 AL158047.1-201ENST00000445918 881 ntBASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 AC142381.4-202ENST00000563973 229 ntBASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 DGCR10-201ENST00000609839 495 ntBASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 AC113410.3-201ENST00000623366 203 ntBASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.08■□□□□ 0.64
ATG4AQ8WYN0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms