Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SLC25A6P5-201ENST00000435663 894 ntBASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 AC069544.1-201ENST00000609399 999 ntBASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ZNF540Q8NDQ6 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 AC138028.4-201ENST00000564984 1845 ntBASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ZNF540Q8NDQ6 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 AL499627.1-201ENST00000569373 2188 ntBASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 AC005829.2-201ENST00000571422 1056 ntBASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ZNF540Q8NDQ6 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF540Q8NDQ6 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms