Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH11P55287 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CDH11P55287 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH11P55287 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH11P55287 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH11P55287 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.89■□□□□ 0.3
CDH11P55287 AC020916.1-201ENST00000587762 1774 ntBASIC16.89■□□□□ 0.3
CDH11P55287 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CDH11P55287 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
CDH11P55287 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.89■□□□□ 0.29
CDH11P55287 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 AC008764.6-201ENST00000595909 2069 ntBASIC16.89■□□□□ 0.29
CDH11P55287 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 MMP23A-201ENST00000234610 1017 ntBASIC16.89■□□□□ 0.29
CDH11P55287 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CDH11P55287 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CDH11P55287 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CDH11P55287 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.89■□□□□ 0.29
CDH11P55287 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.89■□□□□ 0.29
CDH11P55287 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDH11P55287 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CDH11P55287 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH11P55287 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CDH11P55287 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 AL499627.1-201ENST00000569373 2188 ntBASIC16.88■□□□□ 0.29
CDH11P55287 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.88■□□□□ 0.29
CDH11P55287 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.88■□□□□ 0.29
CDH11P55287 FAM210CP-201ENST00000445714 574 ntBASIC16.88■□□□□ 0.29
CDH11P55287 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
CDH11P55287 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.88■□□□□ 0.29
CDH11P55287 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CDH11P55287 AP000525.1-201ENST00000608286 694 ntBASIC16.88■□□□□ 0.29
CDH11P55287 HLA-A-209ENST00000638375 975 ntBASIC16.88■□□□□ 0.29
CDH11P55287 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH11P55287 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CDH11P55287 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH11P55287 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CDH11P55287 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH11P55287 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.87■□□□□ 0.29
CDH11P55287 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 RCC2P6-201ENST00000526625 1557 ntBASIC16.87■□□□□ 0.29
CDH11P55287 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.87■□□□□ 0.29
CDH11P55287 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.87■□□□□ 0.29
CDH11P55287 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.87■□□□□ 0.29
CDH11P55287 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.87■□□□□ 0.29
CDH11P55287 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.87■□□□□ 0.29
CDH11P55287 AL031985.4-201ENST00000642138 673 ntBASIC16.87■□□□□ 0.29
CDH11P55287 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDH11P55287 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms