Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.28■■□□□ 1
CTCFP49711 AC025062.2-201ENST00000605477 670 ntBASIC21.28■■□□□ 1
CTCFP49711 AC093512.1-201ENST00000617969 520 ntBASIC21.28■■□□□ 1
CTCFP49711 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CTCFP49711 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CTCFP49711 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 HOXB1-202ENST00000577092 1414 ntBASIC21.28■■□□□ 1
CTCFP49711 AP005117.1-201ENST00000584346 1413 ntBASIC21.28■■□□□ 1
CTCFP49711 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.28■■□□□ 1
CTCFP49711 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC21.27■■□□□ 1
CTCFP49711 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.27■■□□□ 1
CTCFP49711 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.27■■□□□ 1
CTCFP49711 AP002414.3-201ENST00000589352 1468 ntBASIC21.27■■□□□ 1
CTCFP49711 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CTCFP49711 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CTCFP49711 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.27■■□□□ 1
CTCFP49711 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CTCFP49711 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.27■■□□□ 1
CTCFP49711 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.27■■□□□ 1
CTCFP49711 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.27■■□□□ 1
CTCFP49711 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.27■■□□□ 1
CTCFP49711 C20orf181-201ENST00000623918 480 ntBASIC21.27■■□□□ 1
CTCFP49711 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CTCFP49711 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CTCFP49711 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CTCFP49711 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CTCFP49711 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CTCFP49711 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
CTCFP49711 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
CTCFP49711 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.27■□□□□ 0.99
CTCFP49711 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 AL162377.1-201ENST00000618844 1793 ntBASIC21.26■□□□□ 0.99
CTCFP49711 AL356309.3-201ENST00000624132 1934 ntBASIC21.26■□□□□ 0.99
CTCFP49711 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.26■□□□□ 0.99
CTCFP49711 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.26■□□□□ 0.99
CTCFP49711 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.26■□□□□ 0.99
CTCFP49711 AL008721.1-201ENST00000609964 604 ntBASIC21.26■□□□□ 0.99
CTCFP49711 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.26■□□□□ 0.99
CTCFP49711 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.26■□□□□ 0.99
CTCFP49711 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.26■□□□□ 0.99
CTCFP49711 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CTCFP49711 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.26■□□□□ 0.99
CTCFP49711 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTCFP49711 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.25■□□□□ 0.99
CTCFP49711 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 AC007225.1-201ENST00000566331 1836 ntBASIC21.25■□□□□ 0.99
CTCFP49711 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.25■□□□□ 0.99
CTCFP49711 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.25■□□□□ 0.99
CTCFP49711 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC21.25■□□□□ 0.99
CTCFP49711 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.25■□□□□ 0.99
CTCFP49711 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.25■□□□□ 0.99
CTCFP49711 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.25■□□□□ 0.99
CTCFP49711 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.25■□□□□ 0.99
CTCFP49711 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTCFP49711 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.25■□□□□ 0.99
CTCFP49711 KRT89P-201ENST00000620027 1478 ntBASIC21.25■□□□□ 0.99
CTCFP49711 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CTCFP49711 AC002310.6-201ENST00000624451 1377 ntBASIC21.24■□□□□ 0.99
CTCFP49711 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.24■□□□□ 0.99
CTCFP49711 TSEN15P1-201ENST00000423257 515 ntBASIC21.24■□□□□ 0.99
CTCFP49711 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms