Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CIITAP33076 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.71■□□□□ 0.91
CIITAP33076 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CIITAP33076 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.7■□□□□ 0.9
CIITAP33076 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.7■□□□□ 0.9
CIITAP33076 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.7■□□□□ 0.9
CIITAP33076 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CIITAP33076 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.7■□□□□ 0.9
CIITAP33076 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CIITAP33076 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.69■□□□□ 0.9
CIITAP33076 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.69■□□□□ 0.9
CIITAP33076 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.69■□□□□ 0.9
CIITAP33076 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CIITAP33076 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.69■□□□□ 0.9
CIITAP33076 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.69■□□□□ 0.9
CIITAP33076 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.69■□□□□ 0.9
CIITAP33076 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.69■□□□□ 0.9
CIITAP33076 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.69■□□□□ 0.9
CIITAP33076 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.69■□□□□ 0.9
CIITAP33076 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.69■□□□□ 0.9
CIITAP33076 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
CIITAP33076 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CIITAP33076 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 GMCL1P1-201ENST00000463439 1581 ntBASIC20.68■□□□□ 0.9
CIITAP33076 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CIITAP33076 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.68■□□□□ 0.9
CIITAP33076 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.68■□□□□ 0.9
CIITAP33076 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.68■□□□□ 0.9
CIITAP33076 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.68■□□□□ 0.9
CIITAP33076 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.68■□□□□ 0.9
CIITAP33076 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.68■□□□□ 0.9
CIITAP33076 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CIITAP33076 GPR32P1-201ENST00000601788 811 ntBASIC20.68■□□□□ 0.9
CIITAP33076 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.68■□□□□ 0.9
CIITAP33076 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CIITAP33076 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CIITAP33076 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CIITAP33076 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.67■□□□□ 0.9
CIITAP33076 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CIITAP33076 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms