Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 AC098590.1-201ENST00000468126 897 ntBASIC21.43■■□□□ 1.02
PRPF40AO75400 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.43■■□□□ 1.02
PRPF40AO75400 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.43■■□□□ 1.02
PRPF40AO75400 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.43■■□□□ 1.02
PRPF40AO75400 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.43■■□□□ 1.02
PRPF40AO75400 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.43■■□□□ 1.02
PRPF40AO75400 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PRPF40AO75400 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
PRPF40AO75400 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PRPF40AO75400 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PRPF40AO75400 KRT8P11-201ENST00000409686 1436 ntBASIC21.42■■□□□ 1.02
PRPF40AO75400 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 NBPF21P-201ENST00000425093 1451 ntBASIC21.42■■□□□ 1.02
PRPF40AO75400 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.42■■□□□ 1.02
PRPF40AO75400 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 AC069544.1-201ENST00000609399 999 ntBASIC21.42■■□□□ 1.02
PRPF40AO75400 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PRPF40AO75400 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PRPF40AO75400 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
PRPF40AO75400 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 SIRPAP1-201ENST00000448467 1770 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 KRT8P3-201ENST00000519669 1449 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.41■■□□□ 1.02
PRPF40AO75400 Z85996.1-201ENST00000494644 937 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.41■■□□□ 1.02
PRPF40AO75400 PRKY-204ENST00000533551 1019 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 AC142381.4-202ENST00000563973 229 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PRPF40AO75400 AC108860.2-201ENST00000562760 2183 ntBASIC21.41■■□□□ 1.02
PRPF40AO75400 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PRPF40AO75400 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.41■■□□□ 1.02
PRPF40AO75400 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.4■■□□□ 1.02
PRPF40AO75400 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
PRPF40AO75400 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 AL158047.1-201ENST00000445918 881 ntBASIC21.4■■□□□ 1.02
PRPF40AO75400 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.4■■□□□ 1.02
PRPF40AO75400 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PRPF40AO75400 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.4■■□□□ 1.02
PRPF40AO75400 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms