Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB3O75112 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.33■□□□□ 0.36
LDB3O75112 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LDB3O75112 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LDB3O75112 AL359075.1-203ENST00000462729 1002 ntBASIC17.33■□□□□ 0.36
LDB3O75112 MIR3917-201ENST00000580971 93 ntBASIC17.33■□□□□ 0.36
LDB3O75112 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.33■□□□□ 0.36
LDB3O75112 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LDB3O75112 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.33■□□□□ 0.36
LDB3O75112 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.33■□□□□ 0.36
LDB3O75112 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LDB3O75112 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
LDB3O75112 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 AC090164.3-201ENST00000610780 2143 ntBASIC17.33■□□□□ 0.36
LDB3O75112 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LDB3O75112 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.33■□□□□ 0.36
LDB3O75112 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LDB3O75112 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.32■□□□□ 0.36
LDB3O75112 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
LDB3O75112 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.32■□□□□ 0.36
LDB3O75112 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.32■□□□□ 0.36
LDB3O75112 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
LDB3O75112 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LDB3O75112 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.32■□□□□ 0.36
LDB3O75112 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LDB3O75112 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB3O75112 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB3O75112 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB3O75112 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LDB3O75112 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.31■□□□□ 0.36
LDB3O75112 SPDYE15P-201ENST00000424157 909 ntBASIC17.31■□□□□ 0.36
LDB3O75112 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LDB3O75112 AC092647.4-201ENST00000457211 535 ntBASIC17.31■□□□□ 0.36
LDB3O75112 RASA4DP-201ENST00000460726 1199 ntBASIC17.31■□□□□ 0.36
LDB3O75112 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.31■□□□□ 0.36
LDB3O75112 AC034232.1-201ENST00000506026 1064 ntBASIC17.31■□□□□ 0.36
LDB3O75112 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB3O75112 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LDB3O75112 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.31■□□□□ 0.36
LDB3O75112 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB3O75112 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
LDB3O75112 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.31■□□□□ 0.36
LDB3O75112 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LDB3O75112 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
LDB3O75112 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 HCG11-201ENST00000411553 5696 ntBASIC17.31■□□□□ 0.36
LDB3O75112 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB3O75112 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms