Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.21■□□□□ 0.19
LMX1BO60663 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1BO60663 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1BO60663 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1BO60663 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1BO60663 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LMX1BO60663 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LMX1BO60663 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LMX1BO60663 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LMX1BO60663 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 AC004951.3-201ENST00000418645 1148 ntBASIC16.2■□□□□ 0.18
LMX1BO60663 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LMX1BO60663 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.2■□□□□ 0.18
LMX1BO60663 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 LINC01238-205ENST00000567549 1107 ntBASIC16.2■□□□□ 0.18
LMX1BO60663 WWOX-216ENST00000569818 525 ntBASIC16.2■□□□□ 0.18
LMX1BO60663 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.2■□□□□ 0.18
LMX1BO60663 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.2■□□□□ 0.18
LMX1BO60663 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LMX1BO60663 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 RCC2P3-201ENST00000418112 1537 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LMX1BO60663 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1BO60663 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1BO60663 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
LMX1BO60663 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LMX1BO60663 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1BO60663 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 TSPY14P-201ENST00000303979 915 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
LMX1BO60663 CRYGFP-201ENST00000418459 633 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.19■□□□□ 0.18
LMX1BO60663 ECEL1P2-202ENST00000465689 757 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 AC097488.1-201ENST00000507834 756 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1BO60663 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LMX1BO60663 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 AC011298.2-201ENST00000617989 482 ntBASIC16.19■□□□□ 0.18
LMX1BO60663 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LMX1BO60663 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1BO60663 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
LMX1BO60663 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1BO60663 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1BO60663 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
LMX1BO60663 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.18■□□□□ 0.18
LMX1BO60663 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 B3GAT3P1-201ENST00000471720 806 ntBASIC16.18■□□□□ 0.18
LMX1BO60663 AC011506.1-201ENST00000474329 610 ntBASIC16.18■□□□□ 0.18
LMX1BO60663 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.18■□□□□ 0.18
LMX1BO60663 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.18■□□□□ 0.18
LMX1BO60663 AC006011.2-201ENST00000621313 1158 ntBASIC16.18■□□□□ 0.18
LMX1BO60663 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms