Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIME1Q9H400 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIME1Q9H400 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LIME1Q9H400 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.91■■□□□ 1.1
LIME1Q9H400 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
LIME1Q9H400 MIR219A2-201ENST00000608502 1504 ntBASIC21.9■■□□□ 1.1
LIME1Q9H400 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LIME1Q9H400 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.89■■□□□ 1.1
LIME1Q9H400 AC092296.2-201ENST00000589470 999 ntBASIC21.89■■□□□ 1.09
LIME1Q9H400 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LIME1Q9H400 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.89■■□□□ 1.09
LIME1Q9H400 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LIME1Q9H400 DRD5P2-201ENST00000421395 2012 ntBASIC21.88■■□□□ 1.09
LIME1Q9H400 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LIME1Q9H400 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LIME1Q9H400 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LIME1Q9H400 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIME1Q9H400 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIME1Q9H400 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.86■■□□□ 1.09
LIME1Q9H400 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIME1Q9H400 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LIME1Q9H400 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
LIME1Q9H400 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.85■■□□□ 1.09
LIME1Q9H400 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LIME1Q9H400 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LIME1Q9H400 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.85■■□□□ 1.09
LIME1Q9H400 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LIME1Q9H400 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LIME1Q9H400 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LIME1Q9H400 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.84■■□□□ 1.09
LIME1Q9H400 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LIME1Q9H400 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
LIME1Q9H400 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIME1Q9H400 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIME1Q9H400 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIME1Q9H400 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.83■■□□□ 1.09
LIME1Q9H400 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.83■■□□□ 1.09
LIME1Q9H400 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LIME1Q9H400 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LIME1Q9H400 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LIME1Q9H400 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIME1Q9H400 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.82■■□□□ 1.08
LIME1Q9H400 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIME1Q9H400 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
LIME1Q9H400 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.82■■□□□ 1.08
LIME1Q9H400 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIME1Q9H400 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIME1Q9H400 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
LIME1Q9H400 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
LIME1Q9H400 ECEL1P2-201ENST00000461596 1295 ntBASIC21.81■■□□□ 1.08
LIME1Q9H400 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
LIME1Q9H400 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.81■■□□□ 1.08
LIME1Q9H400 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.81■■□□□ 1.08
LIME1Q9H400 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.81■■□□□ 1.08
LIME1Q9H400 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LIME1Q9H400 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIME1Q9H400 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.8■■□□□ 1.08
LIME1Q9H400 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIME1Q9H400 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LIME1Q9H400 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIME1Q9H400 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
LIME1Q9H400 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIME1Q9H400 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIME1Q9H400 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIME1Q9H400 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIME1Q9H400 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIME1Q9H400 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.78■■□□□ 1.08
LIME1Q9H400 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.78■■□□□ 1.08
LIME1Q9H400 DUX4L18-201ENST00000553347 1267 ntBASIC21.78■■□□□ 1.08
LIME1Q9H400 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIME1Q9H400 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LIME1Q9H400 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.77■■□□□ 1.08
LIME1Q9H400 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIME1Q9H400 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIME1Q9H400 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
LIME1Q9H400 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIME1Q9H400 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIME1Q9H400 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.76■■□□□ 1.07
LIME1Q9H400 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIME1Q9H400 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.76■■□□□ 1.07
LIME1Q9H400 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIME1Q9H400 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIME1Q9H400 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIME1Q9H400 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LIME1Q9H400 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIME1Q9H400 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.74■■□□□ 1.07
LIME1Q9H400 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.74■■□□□ 1.07
LIME1Q9H400 AC129492.7-201ENST00000622992 756 ntBASIC21.74■■□□□ 1.07
LIME1Q9H400 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIME1Q9H400 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIME1Q9H400 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LIME1Q9H400 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LIME1Q9H400 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIME1Q9H400 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
LIME1Q9H400 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIME1Q9H400 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.72■■□□□ 1.07
LIME1Q9H400 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
LIME1Q9H400 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
LIME1Q9H400 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIME1Q9H400 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms