Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.69■■□□□ 1.062e-7■■■■□ 25.5
YBX3P16989 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.55■□□□□ 0.722e-7■■■■□ 25.5
YBX3P16989 PEPD-204ENST00000588328 581 ntTSL 318.39■□□□□ 0.532e-7■■■■□ 25.5
YBX3P16989 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.512e-7■■■■□ 25.5
YBX3P16989 PEPD-213ENST00000609145 570 ntTSL 212.76□□□□□ -0.372e-7■■■■□ 25.5
YBX3P16989 PEPD-205ENST00000588719 484 ntTSL 312.57□□□□□ -0.42e-7■■■■□ 25.5
YBX3P16989 PEPD-208ENST00000590731 557 ntTSL 410.86□□□□□ -0.672e-7■■■■□ 25.5
YBX3P16989 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.733e-8■■■■□ 25.5
YBX3P16989 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.43e-8■■■■□ 25.5
YBX3P16989 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.51e-7■■■■□ 25.5
YBX3P16989 RPL3-203ENST00000402527 1205 ntTSL 524.26■■□□□ 1.471e-7■■■■□ 25.5
YBX3P16989 RPL3-212ENST00000467105 1396 ntTSL 1 (best)19.59■□□□□ 0.731e-7■■■■□ 25.5
YBX3P16989 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.94■□□□□ 0.621e-7■■■■□ 25.5
YBX3P16989 RPL3-215ENST00000481985 557 ntTSL 218.61■□□□□ 0.571e-7■■■■□ 25.5
YBX3P16989 RPL3-206ENST00000453303 916 ntTSL 518.3■□□□□ 0.521e-7■■■■□ 25.5
YBX3P16989 RPL3-211ENST00000465618 2108 ntTSL 1 (best)16.88■□□□□ 0.291e-7■■■■□ 25.5
YBX3P16989 RPL3-213ENST00000471290 481 ntTSL 215.79■□□□□ 0.121e-7■■■■□ 25.5
YBX3P16989 UBA2-207ENST00000592672 353 ntTSL 34.39□□□□□ -1.715e-8■■■■□ 25.5
YBX3P16989 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.07■■■□□ 2.089e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.37■■□□□ 1.499e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.84■■□□□ 1.419e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.49e-7■■■■□ 25.5
YBX3P16989 CENPN-207ENST00000564669 730 ntTSL 328.54■■■□□ 2.164e-9■■■■□ 25.5
YBX3P16989 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC27.62■■■□□ 2.014e-9■■■■□ 25.5
YBX3P16989 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.334e-9■■■■□ 25.5
YBX3P16989 CENPN-204ENST00000428963 971 ntTSL 2 BASIC10.58□□□□□ -0.724e-9■■■■□ 25.5
YBX3P16989 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC9.48□□□□□ -0.894e-9■■■■□ 25.5
YBX3P16989 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC9.02□□□□□ -0.974e-9■■■■□ 25.5
YBX3P16989 ZNF92-205ENST00000488849 582 ntTSL 416■□□□□ 0.153e-8■■■■□ 25.5
YBX3P16989 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.993e-8■■■■□ 25.5
YBX3P16989 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.9□□□□□ -1.33e-8■■■■□ 25.5
YBX3P16989 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.353e-8■■■■□ 25.5
YBX3P16989 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.13□□□□□ -1.753e-8■■■■□ 25.5
YBX3P16989 TMEM33-207ENST00000513558 677 ntTSL 27.01□□□□□ -1.296e-8■■■■□ 25.5
YBX3P16989 SNX5-216ENST00000494401 656 ntTSL 56.56□□□□□ -1.365e-7■■■■□ 25.5
YBX3P16989 SNX5-207ENST00000474883 695 ntTSL 55.61□□□□□ -1.515e-7■■■■□ 25.5
YBX3P16989 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC26.21■■□□□ 1.791e-7■■■■□ 25.5
YBX3P16989 SLC25A11-205ENST00000576951 893 ntTSL 516.41■□□□□ 0.221e-7■■■■□ 25.5
YBX3P16989 KIAA0907-205ENST00000466520 549 ntTSL 316.19■□□□□ 0.188e-17■■■■□ 25.4
YBX3P16989 KIAA0907-204ENST00000465953 619 ntTSL 311.86□□□□□ -0.518e-17■■■■□ 25.4
YBX3P16989 KIAA0907-203ENST00000368321 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.538e-17■■■■□ 25.4
YBX3P16989 KIAA0907-202ENST00000368320 4499 ntTSL 1 (best) BASIC11.6□□□□□ -0.558e-17■■■■□ 25.4
YBX3P16989 KIAA0907-207ENST00000478002 1065 ntTSL 57.66□□□□□ -1.188e-17■■■■□ 25.4
YBX3P16989 DGCR2-202ENST00000389262 4814 ntTSL 1 (best)14.65□□□□□ -0.068e-10■■■■□ 25.4
YBX3P16989 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC13.75□□□□□ -0.218e-10■■■■□ 25.4
YBX3P16989 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.218e-10■■■■□ 25.4
YBX3P16989 DGCR2-205ENST00000537045 4361 ntTSL 2 BASIC13.32□□□□□ -0.288e-10■■■■□ 25.4
YBX3P16989 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.516e-7■■■■□ 25.3
YBX3P16989 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.541e-7■■■■□ 25.3
YBX3P16989 SLC25A11-204ENST00000574710 2176 ntTSL 222.45■■□□□ 1.181e-7■■■■□ 25.3
YBX3P16989 SHC2-205ENST00000590170 816 ntTSL 524.55■■□□□ 1.527e-9■■■■□ 25.3
YBX3P16989 NCSTN-206ENST00000435149 824 ntTSL 312.69□□□□□ -0.386e-7■■■■□ 25.3
YBX3P16989 C9orf78-204ENST00000461762 2390 ntTSL 215.32■□□□□ 0.042e-7■■■■□ 25.3
YBX3P16989 HIVEP1-203ENST00000442081 1044 ntTSL 326.1■■□□□ 1.778e-8■■■■□ 25.2
YBX3P16989 HIVEP1-209ENST00000627968 8924 ntTSL 5 BASIC12.31□□□□□ -0.448e-8■■■■□ 25.2
YBX3P16989 HIVEP1-201ENST00000379388 9027 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.458e-8■■■■□ 25.2
YBX3P16989 HIVEP1-208ENST00000541134 9023 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.458e-8■■■■□ 25.2
YBX3P16989 THOP1-203ENST00000585338 761 ntTSL 333.75■■■□□ 2.996e-7■■■■□ 25.2
YBX3P16989 THOP1-204ENST00000585673 784 ntTSL 332.64■■■□□ 2.826e-7■■■■□ 25.2
YBX3P16989 THOP1-206ENST00000586780 421 ntTSL 324.27■■□□□ 1.486e-7■■■■□ 25.2
YBX3P16989 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.556e-7■■■■□ 25.2
YBX3P16989 ITPR1-219ENST00000544951 4131 ntTSL 1 (best) BASIC11.42□□□□□ -0.586e-7■■■■□ 25.2
YBX3P16989 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.166e-7■■■■□ 25.2
YBX3P16989 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.196e-7■■■■□ 25.2
YBX3P16989 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.42□□□□□ -1.226e-7■■■■□ 25.2
YBX3P16989 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.41□□□□□ -1.226e-7■■■■□ 25.2
YBX3P16989 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC7.3□□□□□ -1.246e-7■■■■□ 25.2
YBX3P16989 SLC5A6-204ENST00000412471 917 ntTSL 537.78■■■■□ 3.642e-15■■■■□ 25.2
YBX3P16989 SLC5A6-206ENST00000426119 676 ntTSL 332.53■■■□□ 2.82e-15■■■■□ 25.2
YBX3P16989 SLC5A6-208ENST00000430186 599 ntTSL 421.82■■□□□ 1.082e-15■■■■□ 25.2
YBX3P16989 SLC5A6-205ENST00000414408 741 ntTSL 520.49■□□□□ 0.872e-15■■■■□ 25.2
YBX3P16989 SLC5A6-207ENST00000428518 570 ntTSL 420.35■□□□□ 0.852e-15■■■■□ 25.2
YBX3P16989 SLC5A6-202ENST00000401463 732 ntTSL 319.28■□□□□ 0.682e-15■■■■□ 25.2
YBX3P16989 SLC5A6-210ENST00000442731 542 ntTSL 418.38■□□□□ 0.532e-15■■■■□ 25.2
YBX3P16989 SLC5A6-211ENST00000445802 871 ntTSL 516.96■□□□□ 0.312e-15■■■■□ 25.2
YBX3P16989 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.252e-15■■■■□ 25.2
YBX3P16989 SLC5A6-209ENST00000432106 725 ntTSL 313.71□□□□□ -0.212e-15■■■■□ 25.2
YBX3P16989 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.332e-8■■■■□ 25.2
YBX3P16989 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.12e-8■■■■□ 25.2
YBX3P16989 DYNLL1-211ENST00000552870 595 ntTSL 2 BASIC14.95□□□□□ -0.022e-8■■■■□ 25.2
YBX3P16989 DYNLL1-202ENST00000392508 697 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.322e-8■■■■□ 25.2
YBX3P16989 IGF2BP1-204ENST00000505562 461 ntTSL 321.32■■□□□ 16e-7■■■■□ 25.2
YBX3P16989 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.16e-10■■■■□ 25.2
YBX3P16989 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.166e-10■■■■□ 25.2
YBX3P16989 GTF3C2-201ENST00000264720 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.542e-7■■■■□ 25.2
YBX3P16989 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.882e-7■■■■□ 25.2
YBX3P16989 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.81■■■□□ 2.843e-11■■■■□ 25.1
YBX3P16989 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.39■■■□□ 2.783e-11■■■■□ 25.1
YBX3P16989 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.783e-11■■■■□ 25.1
YBX3P16989 C20orf24-206ENST00000492721 1044 ntTSL 229.88■■■□□ 2.373e-11■■■■□ 25.1
YBX3P16989 C20orf24-204ENST00000483815 1170 ntTSL 1 (best)24.92■■□□□ 1.583e-11■■■■□ 25.1
YBX3P16989 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.83e-11■■■■□ 25.1
YBX3P16989 C20orf24-207ENST00000494506 874 ntTSL 28.72□□□□□ -1.013e-11■■■■□ 25.1
YBX3P16989 APOBEC3B-202ENST00000335760 1359 ntTSL 1 (best)17.52■□□□□ 0.392e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.352e-7■■■■□ 25.1
YBX3P16989 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.242e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-201ENST00000333467 1533 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.12e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-203ENST00000402182 1844 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.222e-7■■■■□ 25.1
YBX3P16989 MRPL19-207ENST00000493686 720 ntTSL 222.19■■□□□ 1.141e-8■■■■□ 25.1
YBX3P16989 MRPL19-205ENST00000476622 744 ntTSL 219.17■□□□□ 0.661e-8■■■■□ 25.1
Retrieved 100 of 29,075 protein–RNA pairs in 718.8 ms