Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DQA1P01909 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.66■□□□□ 0.58
HLA-DQA1P01909 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DQA1P01909 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HLA-DQA1P01909 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HLA-DQA1P01909 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 AL031258.1-201ENST00000623562 325 ntBASIC18.64■□□□□ 0.57
HLA-DQA1P01909 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DQA1P01909 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.63■□□□□ 0.57
HLA-DQA1P01909 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC18.62■□□□□ 0.57
HLA-DQA1P01909 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.62■□□□□ 0.57
HLA-DQA1P01909 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.62■□□□□ 0.57
HLA-DQA1P01909 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.61■□□□□ 0.57
HLA-DQA1P01909 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DQA1P01909 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DQA1P01909 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DQA1P01909 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.6■□□□□ 0.57
HLA-DQA1P01909 AC012676.1-201ENST00000574705 1949 ntBASIC18.6■□□□□ 0.57
HLA-DQA1P01909 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DQA1P01909 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DQA1P01909 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DQA1P01909 ERN1-208ENST00000606895 2068 ntBASIC18.59■□□□□ 0.57
HLA-DQA1P01909 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
HLA-DQA1P01909 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.59■□□□□ 0.57
HLA-DQA1P01909 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DQA1P01909 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DQA1P01909 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DQA1P01909 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
HLA-DQA1P01909 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DQA1P01909 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HLA-DQA1P01909 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DQA1P01909 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DQA1P01909 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DQA1P01909 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DQA1P01909 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DQA1P01909 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DQA1P01909 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DQA1P01909 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DQA1P01909 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DQA1P01909 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DQA1P01909 AP002414.2-202ENST00000590929 1450 ntBASIC18.55■□□□□ 0.56
HLA-DQA1P01909 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DQA1P01909 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 AC133561.1-201ENST00000568600 2415 ntBASIC18.54■□□□□ 0.56
HLA-DQA1P01909 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DQA1P01909 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HLA-DQA1P01909 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
HLA-DQA1P01909 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DQA1P01909 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DQA1P01909 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DQA1P01909 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DQA1P01909 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HLA-DQA1P01909 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DQA1P01909 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DQA1P01909 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DQA1P01909 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms