Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.86■■□□□ 1.41
LDLRP01130 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LDLRP01130 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LDLRP01130 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
LDLRP01130 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LDLRP01130 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LDLRP01130 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LDLRP01130 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LDLRP01130 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC23.83■■□□□ 1.41
LDLRP01130 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.83■■□□□ 1.41
LDLRP01130 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
LDLRP01130 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LDLRP01130 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.82■■□□□ 1.4
LDLRP01130 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
LDLRP01130 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LDLRP01130 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LDLRP01130 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.81■■□□□ 1.4
LDLRP01130 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.81■■□□□ 1.4
LDLRP01130 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
LDLRP01130 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
LDLRP01130 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LDLRP01130 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
LDLRP01130 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.79■■□□□ 1.4
LDLRP01130 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
LDLRP01130 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LDLRP01130 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
LDLRP01130 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LDLRP01130 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.77■■□□□ 1.4
LDLRP01130 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LDLRP01130 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
LDLRP01130 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LDLRP01130 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
LDLRP01130 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
LDLRP01130 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.76■■□□□ 1.39
LDLRP01130 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
LDLRP01130 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LDLRP01130 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
LDLRP01130 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.75■■□□□ 1.39
LDLRP01130 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LDLRP01130 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LDLRP01130 AC091060.1-201ENST00000623524 1766 ntBASIC23.75■■□□□ 1.39
LDLRP01130 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LDLRP01130 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.74■■□□□ 1.39
LDLRP01130 RARRES2P2-201ENST00000394842 485 ntBASIC23.74■■□□□ 1.39
LDLRP01130 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LDLRP01130 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LDLRP01130 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.74■■□□□ 1.39
LDLRP01130 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.74■■□□□ 1.39
LDLRP01130 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
LDLRP01130 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LDLRP01130 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LDLRP01130 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.73■■□□□ 1.39
LDLRP01130 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L13-201ENST00000554103 1267 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L15-201ENST00000611059 1267 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L23-201ENST00000615195 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L24-201ENST00000617576 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L22-201ENST00000618238 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L20-201ENST00000619712 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L21-201ENST00000622058 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L10-201ENST00000622460 1267 ntBASIC23.73■■□□□ 1.39
LDLRP01130 DUX4L25-201ENST00000624915 1269 ntBASIC23.73■■□□□ 1.39
LDLRP01130 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
LDLRP01130 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LDLRP01130 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.72■■□□□ 1.39
LDLRP01130 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.72■■□□□ 1.39
LDLRP01130 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LDLRP01130 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
LDLRP01130 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LDLRP01130 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LDLRP01130 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LDLRP01130 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
LDLRP01130 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LDLRP01130 ABHD17AP5-201ENST00000580133 923 ntBASIC23.71■■□□□ 1.39
LDLRP01130 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LDLRP01130 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LDLRP01130 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LDLRP01130 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LDLRP01130 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
LDLRP01130 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
LDLRP01130 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.7■■□□□ 1.38
LDLRP01130 AC127502.1-201ENST00000399971 1502 ntBASIC23.69■■□□□ 1.38
LDLRP01130 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LDLRP01130 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LDLRP01130 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
LDLRP01130 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.69■■□□□ 1.38
LDLRP01130 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
LDLRP01130 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.69■■□□□ 1.38
LDLRP01130 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.69■■□□□ 1.38
LDLRP01130 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LDLRP01130 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LDLRP01130 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.68■■□□□ 1.38
LDLRP01130 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.68■■□□□ 1.38
LDLRP01130 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.68■■□□□ 1.38
LDLRP01130 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms