Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AC073508.3-201ENST00000619697 1419 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
ATG4BQ9Y4P1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
ATG4BQ9Y4P1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
ATG4BQ9Y4P1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 TMPOP1-202ENST00000424642 1267 ntBASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4BQ9Y4P1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 AC010240.3-201ENST00000607688 395 ntBASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 BICD1-207ENST00000551848 1962 ntBASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.44■□□□□ 0.38
ATG4BQ9Y4P1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATG4BQ9Y4P1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
ATG4BQ9Y4P1 SDHAP2-201ENST00000455183 2001 ntBASIC17.43■□□□□ 0.38
ATG4BQ9Y4P1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms