Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 AC093677.2-201ENST00000600169 1863 ntBASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 NOC2LP2-201ENST00000407594 1944 ntBASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MIR718-201ENST00000390190 70 ntBASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AC008550.1-201ENST00000511500 884 ntBASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 KRT8P50-201ENST00000562022 1438 ntBASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MIR4674-201ENST00000582457 87 ntBASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.66■□□□□ 0.26
HIF3AQ9Y2N7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 UNC93B2-201ENST00000285383 730 ntBASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SLC25A1P2-201ENST00000430693 912 ntBASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 AL023803.3-201ENST00000615559 522 ntBASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HIF3AQ9Y2N7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HIF3AQ9Y2N7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.64■□□□□ 0.26
HIF3AQ9Y2N7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.64■□□□□ 0.26
HIF3AQ9Y2N7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 RBM17P1-201ENST00000453646 1190 ntBASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 MIR4785-201ENST00000585005 73 ntBASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms