Protein–RNA interactions for Protein: Q96DX8

RTP4, Receptor-transporting protein 4, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTP4Q96DX8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.81■□□□□ 0.6
RTP4Q96DX8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 KRT18P23-201ENST00000435622 1283 ntBASIC18.81■□□□□ 0.6
RTP4Q96DX8 AC007663.1-201ENST00000438948 1240 ntBASIC18.81■□□□□ 0.6
RTP4Q96DX8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.81■□□□□ 0.6
RTP4Q96DX8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RTP4Q96DX8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 AC067852.2-201ENST00000590513 2313 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 AL390955.1-201ENST00000428694 934 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 MIR3180-4-201ENST00000582223 153 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 AC145285.6-201ENST00000604632 637 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 AC010653.2-201ENST00000623505 997 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 AC116562.4-202ENST00000641738 218 ntBASIC18.8■□□□□ 0.6
RTP4Q96DX8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.8■□□□□ 0.6
RTP4Q96DX8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RTP4Q96DX8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 PCDHB18P-201ENST00000524813 2368 ntBASIC18.79■□□□□ 0.6
RTP4Q96DX8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AC005332.8-201ENST00000622750 2735 ntBASIC18.79■□□□□ 0.6
RTP4Q96DX8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 TSPY14P-201ENST00000303979 915 ntBASIC18.79■□□□□ 0.6
RTP4Q96DX8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 KRT8P9-201ENST00000558927 1449 ntBASIC18.79■□□□□ 0.6
RTP4Q96DX8 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.79■□□□□ 0.6
RTP4Q96DX8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RTP4Q96DX8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 MIR1238-201ENST00000408483 83 ntBASIC18.78■□□□□ 0.6
RTP4Q96DX8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RTP4Q96DX8 TMPOP1-202ENST00000424642 1267 ntBASIC18.78■□□□□ 0.6
RTP4Q96DX8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.78■□□□□ 0.6
RTP4Q96DX8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms