Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 MYLKP1-201ENST00000509077 1580 ntBASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 AL163051.1-201ENST00000569214 1512 ntBASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NKX2-3Q8TAU0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX2-3Q8TAU0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 NUS1P1-201ENST00000446295 882 ntBASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 UNC93B7-201ENST00000509439 705 ntBASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
NKX2-3Q8TAU0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NKX2-3Q8TAU0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms